[accepted] [2024] [2023] [2022] [2021] [2020] [2019] [2018] [2017] [2016] [2015] [2014] [2013] [2012] [2011] [2010] [2009] [2007] [2006] [2005]
*These authors contributed equally to the respective work.
| accepted | |
|---|---|
| [203] | Claire Stirm, Kerry Levett, Nancy Maron, Sandra Gesing, Andrew Treloar, Siobhann McCafferty and Juliana Casavan (accepted) Starting with a Firm Foundation: Building a Sustainability Program for the Australian Research Data Commons IWSG 2023, Tuebingen, Germany, June 2023 |
| 2024 |
| 2023 | |
|---|---|
| [202] | Sandra Gesing, Claire Stirm, Michael Zentner, Maytal Dahan and Linda Hayden (2023) SGX3: Novel Concepts to Enhance Knowledge and Extend the Community Around Science Gateways Gateways 2023, Pittsburgh, PA, US, October 2023 |
| [201] | Sandra Gesing, Kerk Kee, Sean Cleveland, Annelie Rugg and Steven Brandt (2023) How to Position Your Gateway for Success: Ten Good Practices Gateways 2023, Pittsburgh, PA, US, October 2023 |
| [200] | Sandra Gesing, Julie Ma, Henry Neeman, Laura Christopherson, Dirk Colbry, Maureen Dougherty, James Griffioen, Susan Tussy, Alycia Crall, John Goodhue, Rafael Ferreira da Silva, Kyle Chard, Marisa Brazil and Thomas Cheatham (2023) Community of Communities: A Working Group Enhancing Interactions Between Organizations and Projects Supporting RC Professionals Gateways 2023, Pittsburgh, PA, US, October 2023 |
| [199] | Braulio Misael Villegas Martinez and Sandra Gesing (2023) Unleashing Quantum Algorithms in QubitHub: Bridging the Gap Between Theory and Practice Across Leading Quantum Computing Platforms Gateways 2023, Pittsburgh, PA, US, October 2023 |
| [198] | Anuj Tiwari, Karan Jogi and Sandra Gesing (2023) COVID-19 Epidemiology Assessment Gateway Gateways 2023, Pittsburgh, PA, US, October 2023 |
| [197] | Gesing, Sandra; Stirm, Claire; Klimeck, Gerhard; Zentner, Lynn; Wang, Su; Villegas Martinez, Braulio; Moya-Cessa, Héctor Manuel; Diaz Eaton, Carrie; Donovan, Sam; Song, Carol; Zhao, Lan; Kim, I Luk Strachan, Alejandro; Zentner, Michael; Kalyanam, Rajesh (2023) Hubzero: Community Growth for Four Science Gateways Supporting Open Science IEEE Computing in Science and Engineering |
| [196] | Kee, Kerk; Hayes, Cassandra; Gesing, Sandra; Rugg, Annelie; Bradley , Shannon; Brandt, Steven; Meyers, Natalie; Johnson, Richard P.; Dombrowski, Quinn (2023) Science Gateways and the Humanities: An Exploratory Study of their Rare Partnership IEEE Computing in Science and Engineering |
| [195] | Sandra Gesing, Ewa Deelman, Michael Hildreth, Ramandeep Makhija, Mary Ann McDowell, Natalie K. Meyers, Douglas Thain (2023) VisDict: Improving Communication via a Visual Dictionary in a Science Gateway IEEE Computing in Science and Engineering |
| [194} | Van Tuyl, Steve; Beck, David; Cosden, Ian; Joyce, Blake; Liu, Jing; Maimone, Christina; McHenry, Kenton; Parker, Micaela; Agate, Nicky; Alonzi, Peter; Burgess, Arlyn; Cleveland, Sean; Culich, Aaron; Daniels, Mike; Davis, Alex; Davis, Sarah; Gesing, Sandra; Greer, Launa; Holdgraf, Chris; Katz, Daniel S.; Levy, Rachel; Markelz, R.J. Cody; Merchant, Nirav; Michael, Scott; Mills, Bill; Oliver, Tiffany; Orso, Alessandro; Pomann, Gina-Maria; Rasool, Rahim; Ratamero, Erick; Riemer, Kristina; Spreadbury, Trevor; Stone, Sarah; Sweeney, Jess; Tomko, Karen; Tomlinson, William J.; Uminsky, David; Vareth, Maryam; Vásquez, Váleri N.; Vu, Elizabeth; Wilson, Bruce E.; Young, Jeffrey (2023) Hiring, Managing, and Retaining Data Scientists and Research Software Engineers in Academia: A Career Guidebook from ADSA and the US-RSE Zenodo |
| [193] | Michael Zentner, Claire Stirm, Sandra Gesing, Robert Quick and Joe Stubbs (2023) The Impact of Artificial Intelligence Computing Paradigms on Science Gateways and National Compute Resources Practice and Experience in Advanced Research Computing 2023 (PEARC'23), Portland, Oregon USA, 2023 |
| [192] | Sandra Gesing and Sandro Fiore (2023) Proceedings of the 14th International Workshop on Science Gateways Zenodo. |
| [191] | Frédéric Labbé,Maha Abdeladhim,Jenica Abrudan,Alejandra Saori Araki,Ricardo N. Araujo,Peter Arensburger,Joshua B. Benoit,Reginaldo Pecanha Brazil,Rafaela V. Bruno,Gustavo Bueno da Silva Rivas,Vinicius Carvalho de Abreu,Jason Charamis,Iliano V. Coutinho-Abreu,Samara G. da Costa-Latgé,Alistair Darby,Viv M. Dillon,Scott J. Emrich,Daniela Fernandez-Medina,Nelder Figueiredo Gontijo,Catherine M. Flanley,Derek Gatherer,Fernando A. Genta, Sandra Gesing,Gloria I. Giraldo-Calderón,Bruno Gomes,Eric Roberto Guimaraes Rocha Aguiar,James G. C. Hamilton,Omar Hamarsheh,Mallory Hawksworth,Jacob M. Hendershot,Paul V. Hickner,Jean-Luc Imler,Panagiotis Ioannidis,Emily C. Jennings,Shaden Kamhawi,Charikleia Karageorgiou,Ryan C. Kennedy,Andreas Krueger,José M. Latorre-Estivalis,Petros Ligoxygakis,Antonio Carlos A. Meireles-Filho,Patrick Minx,Jose Carlos Miranda,Michael J. Montague,Ronald J. Nowling,Fabiano Oliveira,João Ortigão-Farias,Marcio G. Pavan,Marcos Horacio Pereira,Andre Nobrega Pitaluga,Roenick Proveti Olmo,Marcelo Ramalho-Ortigao,José M. C. Ribeiro,Andrew J. Rosendale,Mauricio R. V. Sant’Anna,Steven E. Scherer,Nágila F. C. Secundino,Douglas A. Shoue,Caroline da Silva Moraes,João Silveira Moledo Gesto,Nataly Araujo Souza,Zainulabueddin Syed,Samuel Tadros,Rayane Teles-de-Freitas,Erich L. Telleria,Chad Tomlinson,Yara M. Traub-Csekö,João Trindade Marques,Zhijian Tu,Maria F. Unger,Jesus Valenzuela,Flávia V. Ferreira,Karla P. V. de Oliveira,Felipe M. Vigoder,John Vontas,Lihui Wang,Gareth D. Weedall,Elyes Zhioua,Stephen Richards,Wesley C. Warren,Robert M. Waterhouse,Rod J. Dillon,Mary Ann McDowell (2023) Genomic analysis of two phlebotomine sand fly vectors of leishmania from the new and old World PLOS Neglected Tropical Diseases, 17:4, 2023, https://doi.org/10.1371/journal.pntd.0010862 |
| [190] | Sandra Gesing, Marlon Pierce, Suresh Marru, Michael Zentner, Kathryn Huff, Shannon Bradley, Sean B. Cleveland, Steven R. Brandt, Rajiv Ramnath, Kerk Kee, Maytal Dahan, Braulio M. Villegas Martínez, Wilmer Contreras Sepulveda and José J. Sánchez Mondragón (2023) Science Gateways and AI/ML: How Can Gateway Concepts and Solutions Meet the Needs in Data Science? In: Critical Infrastructure - Modern Approach and New Developments, InTechOpen, DOI: 10.5772/intechopen.110144 |
| 2022 | |
|---|---|
| [189] | Tiwari, A., Prathiba A.P, Gesing, S., and Catlett, C. (2022) Investigating Persistence Surface Urban Heat Island (PSUHI) with respect to the Local Climate Zones (LCZs) in Chicago, USA AGU Fall Meeting 2022, December 2022 |
| [188] | Packman, A.I., Poretsky, R., Owens,S., Catlett, C., Grippo, M., Tiwari, A., Shrestha, A., Dorevitch, S., Owen, C., Clements, L., Pierce, M., White, K., Gesing, S., Leisman, K., Morton, D., Hartmann, E., Chen, G., Warns, M., Mangan, N., Feng, S., Wells, G., Harkness, A., Jasmin, W., Hart, J. and Ghinai, I. (2022) Pandemic Intelligence: Linking Wastewater Infrastructure, Microbial Ecology, and Hydrological Time-Series Analysis to Provide Population-Level Information for COVID-19 Response AGU Fall Meeting 2022, December 2022 |
| [187] | Pierce, M., Zentner, M., Dahan, M., Gesing, S., Stirm, C., Hayden, L.B. (2022) The Science Gateway Community Institute's Consulting Services Program: Lessons for Research Software Engineering Organizations RSE-HPC-2022 at SC22, November 2022, https://doi.org/10.48550/arXiv.2209.03958 |
| [186] | Kee, K.F., Gesing, S., Rugg, A., Bradley, S., Brandt, S.R., Meyers, N.K., Dombrowski, Q. (2022) Science Gateways and Humanities Is a Promising Partnership: Why Is It So Rare? Gateways 2022, October 2022 |
| [185] | Gesing, S., Deelman, E., Ferreira da Silva, R., Hildreth, M., McDowell, M. A., Meyers, N., Thain, D. (2022) VisDict: A Visual Dictionary in a Science Gateway Gateways 2022, October 2022 |
| [184] | Stirm, C., Zentner, M., Gesing, S. (2022) Revenue Generation for Science Gateways Gateways 2022, October 2022 |
| [183] | Tiwari, A., Leisman, K., Shrestha, A., Poretsky, R., Owens, S., Dorevitch, S., Grippo, M., Packman, A.I., Gesing, S., Catlett, C. (2022) A Science Gateway for Wastewater-based Epidemiology - a Case Study of the World's Largest Wastewater Treatment Plant in Chicago Poster at Gateways 2022, October 2022 |
| [182] | Gesing, S. (2022) Roles of Professional Research Software Engineers in the Science Gateway Landscape Research Software Engineers in eScience (RSE-eScience-2022), October 2022 |
| [181] | Hong, Neil P. Chue ; Katz, Daniel S. ; Barker, Michelle ; Lamprecht, Anna-Lena ; Martinez, Carlos ; Psomopoulos, Fotis E. ; Harrow, Jen ; Castro, Leyla Jael ; Gruenpeter, Morane ; Martinez, Paula Andrea ; Honeyman, Tom ; Struck, Alexander ; Lee, Allen ; Loewe, Axel ; Werkhoven, Ben van ; Garijo, Daniel ; Plomp, Esther ; Genova, Francoise ; Shanahan, Hugh ; Hellström, Maggie ; Sandström, Malin ; Sinha, Manodeep ; Kuzak, Mateusz ; Herterich, Patricia ; Islam, Sharif ; Sansone, Susanna-Assunta ; Pollard, Tom ; Atmojo, Udayanto Dwi ; Williams, Alan ; Czerniak, Andreas ; Niehues, Anna ; Fouilloux, Anne Claire ; Desinghu, Bala ; Goble, Carole ; Richard, Céline ; Gray, Charles ; Erdmann, Chris ; Nüst, Daniel ; Tartarini, Daniele ; Ranguelova, Elena ; Anzt, Hartwig ; Todorov, Ilian ; McNally, James ; Burnett, Jessica ; Garrido-Sánchez, Julián ; Belhajjame, Khalid ; Sesink, Laurents ; Hwang, Lorraine ; Tovani-Palone, Marcos Roberto ; Wilkinson, Mark D. ; Servillat, Mathieu ; Liffers, Matthias ; Fox, Merc ; Miljković, Nadica ; Lynch, Nick ; Lavanchy, Paula Martinez ; Gesing, Sandra; Stevens, Sarah ; Cuesta, Sergio Martinez ; Peroni, Silvio ; Soiland-Reyes, Stian ; Bakker, Tom ; Rabemanantsoa, Tovo ; Sochat, Vanessa ; Yehudi, Yo ; WG, FAIR4RS. (2022) FAIR Principles for Research Software (FAIR4RS Principles). Manchester output report. |
| [180] | Carver, J.C., Weber, N., Ram, K., Gesing, S., Katz, D.S.. (2022). A survey of the state of the practice for research software in the United States PeerJ Computer Science 8:e963, https://doi.org/10.7717/peerj-cs.963 |
| [179] | Pierantoni, G., Kiss, T., Bolotov, A., Kagialis, D., Deslauriers, J., Ullah, A., Chen, H., Chan You Fee, D., Dang, H., Kovacs, J., Belehaki, A., Herekakis, T., Tsagouri, I. and Gesing, S. (2022) Towards a Reference Architecture based Science Gateway Framework with Embedded E-Learning Support Concurrency and Computation: Practice & Experience, January 2022 |
| [178] | Gesing, S., Stirm, C., Klimeck, G., Zentner, L., Wang, S., Villegas Martinez, B.M., Diaz Eaton, C., Donovan, S., Zhao, L. , Song, C., Kim, I.L., Strachan, A., Zentner, M. and Kalyanam, R. (2022) Open Science via HUBzero: Exploring Five Science Gateways Supporting and Growing their Open Science Communities Proc. of HICSS-55 (55th Hawaii International Conference on System Sciences), Open Science Practices in Information Systems Research, January 2022, http://hdl.handle.net/10125/79420 |
| 2021 | |
|---|---|
| [177] | Casanova, H., Deelman, E., Gesing, S., Hildreth, M., Hudson, S., Koch, W., Larson, J., McDowell, M. A., Meyers, N., Navarro, J.-L., Papadimitriou, G., Tanaka, R., Taylor, I., Thain, D., Wild, S. M., Filgueira, R., & Ferreira da Silva, R. (2021). Emerging Frameworks for Advancing Scientific Workflows Research, Development, and Education 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 74–80. https://doi.org/10.1109/WORKS54523.2021.00015 |
| [176] | Gesing, S., Dahan M., Hayden, L., Pierce, M., Stirm, C., and Zentner, M. (2021) SGCI: Advancing Access to Scientific Software via Science Gateways Improves the Trust within the Computational Sciences Landscape Workshop on the Science of Scientific-Software Development and Use, December 2021 |
| [175] | Gesing, S., Carver, Jeffrey C., Cosden, I., Damerow, J., Ferenbaugh, C., Hill, C., Katz, D.S., Maimone, C., and Parsons, L. (2021) The US-RSE Association: Accelerating Changes in the Scientific-Computing Community to Improve Practices for Software Development and Use Workshop on the Science of Scientific-Software Development and Use, December 2021 |
| [174] | Stirm, C., Gesing, S., Zentner, M., Klimeck, G., Zentner, L. and Dearborn, C. (2021) HUBzero’s Variations of Sustainability: From Simulation/Modeling Tools to Communities IWSG 2019 (11th International Workshop on Science Gateways), 12-14 June 2019, Ljubljana, Slovenia CEUR Workshop Proceedings, online http://ceur-ws.org/Vol-2975/paper6.pdf |
| [173] | Stankovski, V. and Gesing, S. (eds) (2021) IWSG 2019 - International Workshop on Science Gateways 2019 CEUR Workshop Proceedings, online http://ceur-ws.org/Vol-2975/ |
| [172] | Andreev, A., Morrell, T., Briney, K., Gesing, S., and Manor, U. (2021), Biologists need modern data infrastructure on campus URL: https://arxiv.org/abs/2108.07631 |
| [171] | Ferreira da Silva, R. , Casanova, H., Chard, K., Coleman, T., Laney, D., Ahn, D. H., Jha, S., Howell, D., Soiland-Reyes, S., Altintas, I., Thain, D., Filgueira, R., Babuji,Y. N., Badia, R. M., Balis, B., Caíno-Lores, S., Callaghan, S., Coppens, F., Crusoe,M. R., De, K., Natale, F. D., Do, T. M. A., Enders, B., Fahringer, T., Fouilloux, A.,Fursin, G., Gaignard, A., Ganose, A., Garijo, D., Gesing, S., Goble, C. A., Hasan,A., Huber, S., Katz, D. S., Leser, U., Lowe, D., Ludäscher, B., Maheshwari, K.,Malawski, M., Mayani, R., Mehta, K., Merzky, A., Munson, T. S., Ozik, J., Pottier,L., Ristov, S., Roozmeh, M., Souza, R., Suter, F., Tovar, B., Turilli, M., Vahi, K.,Vidal-Torreira, A., Whitcup, W. R., Wilde, M., Williams, A., Wolf, M. and Wozniak,J. M. (2021), Workflows community summit: Advancing the state-of-the-art ofscientific workflows management systems research and development CoRRabs/2106.05177. URL:https://arxiv.org/abs/2106.05177 |
| [170] | Gesing, S., Brandt, S., Bradley, S., Potkewitz, M., Kee, K., Whysel, N., Perri, M., Cleveland, S., Rugg, A. and Smith, J. (2021) A Vision for Science Gateways: Bridging the Gap and Broadening the Outreach Practice and Experience in Advanced Research Computing. Association for Computing Machinery, New York, NY, USA, Article 1, 1–8. DOI:https://doi.org/10.1145/3437359.3465579 |
| [169] | Neeman, H., Rivera, L., DeStefano, L., Al-Azzawi, H., Brunson, D., Clemins, P.J., Colbry, D., Frye, C., Gesing, S., Gyllinsky, J.V., Klimaszewski-Patterson, A., Phataralaoha, A., Price, T., Tanash, M. and Voss, D. (2021) An Evaluation of Cyberinfrastructure Facilitators Skills Training in the Virtual Residency Program Practice and Experience in Advanced Research Computing. Association for Computing Machinery, New York, NY, USA, Article 53, 1–7. DOI:https://doi.org/10.1145/3437359.3465560 |
| [168] | Gesing, S., Meyers, N., Johnson, R. and Wang, J. (2021) PresQT Services - A Path Forward for Connecting Platforms While Increasing Quality and FAIRness of Data and Software US-RSE Virtual Workshop 2021 |
| [167] | Gesing, S., Stirm, C., Zentner, M. (2021) HUBzero - Achieving Software Sustainability for a Science Gateway Framework Collaborations Workshop 21, March 30 - April 1, 2021 |
| [166] | Gesing, S., Meyers, N., Johnson, R. and Wang, J. (2021) PresQT – Services to Improve Re-use and FAIRness of Research Data and Software Collaborations Workshop 21, March 30 - April 1, 2021 |
| [165] | Carver, J., Cosden, I., Hill, C., Gesing, S., Katz, D.S.(2021) Sustaining Research Software via Research Software Engineers and Professional Associations ICSE 2021 BokSS Workshop, June 2021, arXiv:2103.01880 [cs.SE] |
| [164] | Katz, D., Carver, J., Chue Hong, N., Gesing, S., Hettrick, S., Honeyman, T., Ram, K., Weber, N. (2021) Addressing Research Software Sustainability via Institutes ICSE 2021 BokSS Workshop, June 2021, arXiv:2103.03690 [cs.SE] |
| [163] | Stirm, C., Snodgrass, N., Gesing, S., Zentner, M. (2021) Minisymposterium: Establishing Online Science Communities - Three Science Gateway Examples SIAM CSE21, March 2021 |
| [162] | Parsons, L., Cosden, I., Carver, J., Ferenbaugh, C., Gesing, S., Hill, C., Katz, D.S., Maimone, C., Perr-Sauer, J. (2021) Minisymposterium: Sustainable Software through Stronger Community SIAM CSE21, March 2021 |
| [161] | Tettegah, S., Gesing, S., Ferreira da Silva, R., Jiang, Y., Craig, A.B. (2021) How to Enhance Diversity in Software Engineering Teams? SIAM CSE21, March 2021 |
| [160] | Cosden, I., Carver, J., Ferenbaugh, C., Gesing, S., Hill, C., Katz, D.S., Maimone, C., Parsons, L., Perr-Sauer, J. (2021) The US-RSE Association: A Community-Driven National Organization of Research Software Engineers SIAM CSE21, March 2021 |
| [159] | Ferreira da Silva, R. Gesing, S., Sakellariou, R., Taylor, I. (eds.) (2021) Special issue on workflows in support of large-scale science Future Generation Computer Systems, volume 118, 2021, Pages 73-74 |
| 2020 | |
|---|---|
| [158] | Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T, Cambon-Thomsen A, Carroll SR, Cournia Z, Dabrowski PW, Diallo G, Duflot T, Garcia L, Gesing, S., Gonzalez-Beltran A, Gururaj A, Harrower N, Lin D, Medeiros C, Méndez E, Meyers N, Mietchen D, Nagrani R, Nilsonne G, Parker S, Pickering B, Pienta A, Polydoratou P, Psomopoulos F, Rennes S, Rowe R, Sansone SA, Shanahan H, Sitz L, Stocks J, Tovani-Palone MR, Uhlmansiek M (2020) Research Data Alliance. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group. Wellcome Open Res. 2020 Nov 9;5:267. doi: 10.12688/wellcomeopenres.16378.1. PMID: 33501381; PMCID: PMC7808050. |
| [157] | Calyam, P., Wilkins-Diehr, N., Miller, M. Brookes, E., Arora, R., Chourasia, A., Jennewein, D., Nandigam, V., Lamar, M. D., Cleveland, S., Newman, G., Wang, S., Zaslavsky, I., Cianfrocco, M., Ellett, K., Tarboton, D., Jeffery, K., Zhao, Z., González-Aranda, J., Perri, M., Tucker, G., Candela, L., Kiss, T. and Gesing, S. (2020) Measuring Success for a Future Vision: Defining Impact in Science Gateways/Virtual Research Environments Concurrency and Computation, 2020;e6099. doi. https://doi.org/10.1002/cpe.6099 |
| [156] | Gesing, S., Meyers, N., Johnson, R. and Wang, J. (2020) Improving the Publication and Re-Use of Data via PresQT Tools and Services AGU Conference, December 2020. |
| [155] | Gesing, S., Graves, J.B. and Zentner, M. (2020) Hubdrive: Enhancing HUBzero© for Offline Data Sharing In: EGI Conference, November 2020. |
| [154] | Graves, J.B., Gesing, S. and Zentner, M. (2020) Hubdrive: Supporting Seamlessly Peer-to-Peer Data Sharing In: EGI Conference, November 2020. |
| [153] | Gesing, S., Cleveland, S.B., Bradley, S. and Corwin, B. (2020) How to Build and Engage with Your Community In: Gateways, October 2020, virtual. |
| [152] | Parsons, P., Chen, Y., Ho, Y., Groothuis, K., Dentler, B., Stirm, C., Gesing, S. and Zentner, M. (2020) Common Usability Problems and Solutions for Science Gateways In: Gateways, October 2020, virtual. |
| [151] | Jay, C., Haines, R., Katz, D.S., Carver, J., Gesing, S., Brandt, S.R., Howison, J., Dubey, A., Phillips, J.C., Wan, H., and Turk, M. (2020) The Challenges of Theory-Software Translation F1000Research 2020, 9:1192, doi: https://doi.org/10.12688/f1000research.25561.1 |
| [150] | RDA COVID-19 Working Group. (2020) Recommendations and Guidelines on Data Sharing Research Data Alliance, 2020. DOI: https://doi.org/10.15497/rda00052 |
| [149] | Neeman, H., Akin, D., Al-Azzawi, H., Brandt, K.L., Brooks Kieffer, J., Brunson, D., Colbry, D., Gesing, S., Klimaszewski-Patterson, A., Mizumoto, C., Pine-Thomas, J. A., Schwartz, A. Z., Severini, H., Voss, D. and Tanash, M. (2020) Cyberinfrastructure Facilitation Skills Training via the Virtual Residency Program In Proceedings of the Practice and Experience in Advanced Research Computing 2020 (PEARC'20), Portland, Oregon USA, 2020, pp. 421-428, doi: https://doi.org/10.1145/3311790.3396629. |
| [148] | Parsons, P., Gesing, S., Stirm, C. and Zentner, M. (2020) SGCI Incubator and Its Role in Workforce Development: Lessons Learned from Training, Consultancy, and Building a Community of Community-Builders for Science Gateways In Proceedings of the Practice and Experience in Advanced Research Computing 2020 (PEARC'20), Portland, Oregon USA, July 2020, pp. 491-494, doi: https://doi.org/10.1145/3311790.3400850 |
| [147] | Gesing, S. Increasing Developer Productivity by Assigning Well-Defined Roles in Teams Collegeville Workshop 2020, virtual, 2 pages, 2020 |
| [146] | Benham, D. and Gesing, S. (2020) HUBzero© Goes OneSciencePlace: The Next Community-Driven Steps for Providing Software-as-a-Service 2019 15th International Conference on eScience (eScience), San Diego, CA, USA, 2019, pp. 642-643, doi: 10.1109/eScience.2019.00097. |
| [145] | Brower, D., Gesing, S., Johnson, R., Meyers, N., Meyerson, J. and Narlock, M. (2020) ATG Special Report - On Institutional Repositories, “Beyond the Repository Services,” their Content, Maintainers, and Stakeholders Against the Grain, April 2020 |
| [144] | Dahan, M., Gesing, S. and Pirzl, R. (eds.) (2020) Special Issue on Science Gateway Workshops Special Issue 2017 Future Generation Computer Systems, volume 98, pages 154-322, 2020 |
| [143] | Saxena, A., Joshi, R., Darbari, H., Mazurek, C., Bhat, A., Srivastava, A., Wojkovich, K., Buetow, K. and Gesing, S. (2020) The ICTBioMed NCIP Hub: Cancer research in a science gateway consortium Future Generation Computer Systems. Volume 105, April 2020, pp. 27-32 |
| 2019 | |
|---|---|
| [142] | Abramson, D., Pierce, M. and Gesing, S. (eds.) (2019) Special issue on Science Gateways 2016 Future Generation Computer Systems, volume 94, pages 801-956, 2019 |
| [141] | Jay, C., Haines, R., Katz, D.S., Carver, J., Phillips, J.C., Dubey, A., Gesing, S., Turk, M., Wan, H., van Dam, H., Howison, J., Morozov, V. and Brandt, S.R. (2019) Theory-Software Translation: Research Challenges and Future Directions arXiv:1910.09902 [cs.SE] |
| [140] | Gesing, S., Brazil, M., Brunson, D., Cosden, I., Crawford, T.D. Ferreira da Silva, R., Katz, D.S. and Neeman, H. (2019) Panel: Sustainability of HPC Research Computing: Fostering Career Paths for Facilitators, Research Software Engineers, and Gateway Creators SC19, 17-22 November 2019, Denver, CO, USA |
| [139] | Gesing, S., Pierce, M., Dahan, M, Rice, R., Chard, K., Miller, M. and Clements, D. (2019) Plenary Panel: Effective Checklists for Developers and Researchers to Gather Requirements for Science Gateways Gateways 2019, San Diego, CA, USA, 23-25 September 2019 |
| [138] | Gesing, S., Cosden, I. and Ferenbaugh, C. (2019) Building a Community of Research Software Engineers BoF at PEARC '19: Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), Chicago, IL, 2019, July 28 - August 1, 2019 |
| [137] | Gesing, S., Stirm, C., Zentner, M., Haley, B., Clark, S., and HUBzero Team (2019) HUBzero®: Novel Concepts Applied to Established Computing Infrastructures to Address Communities’ Needs PEARC '19: Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), Chicago, IL, 2019, July 28 - August 1, 2019 |
| [136] | Neeman, H., Al-Azzawi, H.M., Brunson, D., Burke, W., Colbry, D., Falgout, J.T., Ferguson, J.W., Gesing, S., Gyllinsky, J., Simmons, C.S., Simms, J.L., Tanash, M., Voss, D., Wells, J., and Yockel, S. (2019) Cultivating the Cyberinfrastructure Workforce via an Intermediate/Advanced Virtual Residency Workshop PEARC '19: Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), Chicago, IL, 2019, July 28 - August 1, 2019 |
| [135] | Gesing, S. and Ferreira da Silva, R. (2019) 2019 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS) IEEE Xplore |
| [134] | Gesing, S., Dahan, M., Zentner, M., Wilkins-Diehr, N. and Lawrence, K. (2019) The Science Gateways Community Institute: Collaborations and efforts on international scale Future Generation Computer Systems, Volume 101, December 2019, Pages 951-958 |
| [133] | Gesing, S., Benham, D.R. and the HUBzero© team (2019) OneSciencePlace: Sustainability Measures for a Science Gateway Framework 2019 Collegeville Workshop on Sustainable Scientific Software (CW3S19), Collegeville, MN, USA, 22-24 July 2019 |
| [132] | Stirm, C., Zink, R., Gesing, S., Zentner, M., and Junk, D.. (2019) REMEDI central - expanding and sustaining a medical device community Future Generation Computer Systems, Volume 101, December 2019, Pages 372-380 |
| [131] | Gesing, S., Wilkins-Diehr, N., Dahan, M., Zentner, M. and Lawrence, K.(2019) The Science Gateways Community Institute: Going Beyond Borders IWSG 2017 (9th International Workshop on Science Gateways), 19-21 June 2017, Poznan, Poland |
| [130] | Gesing, S., Kurowski, K., Kiss, T. (2019) IWSG 2017 - International Workshop on Science Gateways 2017 CEUR Workshop Proceedings, online http://ceur-ws.org/Vol-2363/ |
| [129] | Atkinson, M. and Gesing, S. (2019) IWSG 2018 - International Workshop on Science Gateways 2018 CEUR Workshop Proceedings, online http://ceur-ws.org/Vol-2357/ |
| [128] | Stirm, C., Zink, R. and Gesing, S. (2019) REMEDI - Tactics of Expanding a Science Gateway Community Proc. of IWSG 2018 (10th International Workshop on Science Gateways), 13-15 June 2018, Edinburgh, Scotland, http://ceur-ws.org/Vol-2357/paper1.pdf |
| [127] | Pierce, M., Miller, M., Brookes, E., Wong, M., Liu, Y., Afgan, E., Gesing, S. , Dahan, M., Marru, S. and Walker, T. (2019) Towards a Science Gateway Reference Architecture Proc. of IWSG 2018 (10th International Workshop on Science Gateways), 13-15 June 2018, Edinburgh, Scotland, http://ceur-ws.org/Vol-2357/paper6.pdf |
| [126] | Gesing, S. (2019) SGCI and the conceptualization of URSSI: Addressing challenges in software sustainability Spring 2019 ACS National Meeting, Orlando, FL, March 31 – April 4, 2019 |
| [125] | Katz, D.S., Aerts, P., Chue Hong, N., Dubey, A., Gesing, S., Neeman, H., Pearah, D. (2019) Sustaining Research Software: an SC18 Panel arXiv:1902.08942 [cs.SE] |
| [124] | Barker, M., Olabarriaga, S., Wilkins-Diehr, N., Gesing, S., Katz, D.S., Shahand, S., Henwood, S., Glatard, T., Jeffery, K., Corrie, B., Glaves, H., Wyborn, L., Hong, N.C., and Costa, A. (2019) The Global Impact of Science Gateways, Virtual Research Environments and Virtual Laboratories Future Generation Computer Systems |
| [123] | Gesing, S., Lawrence, K., Dahan, M., Pierce, M.E., Wilkins-Diehr, N. and Zentner, M. (2019) Science gateways: Sustainability via on-campus teams Future Generation Computer Systems, volume 94, pages 97-102, May 2019. |
| [122] | Banegas-Luna, A.J., Imbernon, B., Llanes Castro, A., Perez-Garrido, A., Ceron-Carrasco, J.P., Gesing, S., Merelli, I., D’Agostino, D. and Perez-Sanchez, Horacio (2019) Advances in distributed computing with modern drug discovery Expert Opinion on Drug Discovery, 14(1):9-22, 2019, doi:10.1080/17460441.2019.1552936 |
| 2018 | |
|---|---|
| [121] | Gesing, S. and Ferreira da Silva, R. (2018) 2018 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS) IEEE Xplore |
| [120] | Katz, D. S., McInnes, L.C., Bernholdt, D.E., Mayes, A.C., Hong, N.P.C, Duckles, J., Gesing, S., Heroux, M.A., Hettrick, S., Jimenez, R.C., Pierce, M., Weaver, B. and Wilkins-Diehr, N. (2018) Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained Computing in Science & Engineering, doi: 10.1109/MCSE.2018.2883051 |
| [119] | Meyers, N.K., Gesing, S., Wang, Z. and Johnson, R. (2018) Tools and RESTful Services to Improve Preservation and Re-use of Research Data & Software AGU Fall Meeting 2018, December 10-14, 2018, Washington, DC, USA |
| [118] | Stirm, C., Zentner, M., Casavan, J., Hoebelheinrich, N., Craddock, R.C., Cleveland, S., Gesing, S. and Escherich, A. (2018) Science Gateways Community Institute Incubator Pitch Deck: Success Stories from the 2nd & 3rd Bootcamp Gateways 2018, Austin, TX, USA, September 25-27, 2018. |
| [117] | Gesing, S., Zentner, M. and Stirm, C. (2018) Science Gateways Community Institute: Developing Strategies for Sustainability of Projects via Bootcamps Digital Infrastructures for Research 2018, Lisbon, Portugal, October 9-11, 2018. |
| [116] | Zentner, M., Delgado Olabarriaga, S. and Gesing, S. (2018) Business or Research Project? A case study of the evolving business model of HUBzero Digital Infrastructures for Research 2018, Lisbon, Portugal, October 9-11, 2018. |
| [115] | Neeman, H., Al-Azzawi, H.M., Bergstrom, A., Braiterman, Z.K., Brunson, D., Colbry, D., Colmenares, E., Fuller, A.N., Gesing, S., Kalyvaki, M., Mizumoto, C., Park, J., Schwartz, A.Z., Simms, J.L. and Vania, R. (2018) Progress Update on the Development and Implementation of the Advanced Cyberinfrastructure Research & Education Facilitators Virtual Residency Program PEARC '18 Proceedings of the Practice and Experience on Advanced Research Computing, Article No. 71, Pittsburgh, PA, USA, July 22 - 26, 2018, DOI: 10.1145/3219104.3219117 |
| [114] | Carver, J., Gesing, S., Katz, D.S., Ram, K. and Weber, N. (2018) Conceptualization of a US Research Software Sustainability Institute (URSSI) IEEE Computing in Science & Engineering, Volume: 20, Issue: 3, pp. 4-9, 2018, DOI: 10.1109/MCSE.2018.03221924 |
| [113] | Katz, D.S., Niemeyer, K., Gesing, S., Hwang, L., Bangerth, W., Hettrick, S., Idaszak, R., Salac, J., Chue Hong, N., Nunez-Corrales, S., Allen,A., Geiger, R.S., Miller, J., Chen, E., Dubey, A., Lago, P (2018) Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4) Journal of Open Research Software, 6(1), p.10. DOI: http://doi.org/10.5334/jors.184 |
| [112] | Gesing, S. (2018) Science Gateways in HPC: Usability Meets Efficiency and Effectiveness In: Modeling and Simulation in HPC and Cloud Systems, Book Series "Studies in Big Data" Print ISBN: 978-3-319-73766-9, Electronic ISBN: 978-3-319-73767-6, Springer International Publishing |
| 2017 | |
|---|---|
| [111] | Gesing, S., Dooley, R., Pierce, M., Krüger, J., Grunzke, R., Herres-Pawlis, S. and Hoffmann, A. (2017) Gathering Requirements for Advancing Simulations in HPC Infrastructures via Science Gateways Future Generation Computer Systems, https://doi.org/10.1016/j.future.2017.02.042 |
| [110] | Gesing, S., Zentner, M., Casavan, J., Hillery, B., Vorvoreanu, M., Heiland, R., Marru, S., Pierce, M., Mullinix, N., Maron, N. (2017) Science Gateways Incubator: Software Sustainability Meets Community Needs 2017 IEEE 13th International Conference on e-Science (e-Science), Auckland, 2017, pp. 477-485. doi:10.1109/eScience.2017.77 |
| [109] | Olabarriaga, S., Gesing, S., Stirm, C., Shawn, R., and Zentner, M. (2017) HUBzero Platform as Brick for Open Science Construction Digital Infrastructures for Research 2017, 30 November - 1 December 2017, Brussels, Belgium |
| [108] | Montagnat, J., Taylor, I., Gesing, S. and Sakellariou, R. (eds.)(2017) Proceedings of the 12th Workshop on Workflows in Support of Large-Scale Science ACM, SC17, Denver, Colorado, 2017, ISBN 978-1-4503-5129-4 |
| [107] | Gesing, S., Lawrence, K., Wilkins-Diehr, N., Dahan, M., Zentner, M., Pierce, M. (2017) Science Gateways: Sustainability via On-Campus Teams Gateways 2017, 23-25 October, Ann Arbor, USA, https://doi.org/10.6084/m9.figshare.5483566.v1 |
| [106] | Gesing, S., Zentner, M., Casavan, J., Heiland, R., Hillery, B., Marru, S., Pierce, M., Maron, N., Mullinix, N., Vorvoreanu, M. (2017) Science Gateways Bootcamp: Strategies for Developing, Operating and Sustaining Science Gateways IWSG-A 2017 (International Workshop on Science Gateways - Australia), 16-17 October 2017, Brisbane, Australia |
| [105] | Saxena, A., Joshi, R., Darbari, H., Zentner, M., Wojkivich, K., Bhat, A., Srivastava, A., Buetow, K., Mazurek, C., and Gesing, S. (2017) ICTBioMed NCIP Science Gateway: A Hub for Collaborative Cancer Research Poster at Gateways 2017, 23-25 October, Ann Arbor, USA, https://doi.org/10.6084/m9.figshare.5483389.v2 |
| [104] | Saxena, A., Joshi, R., Darbari, H., Mazurek, C., Bhat, A., Srivastava, A., Wojkovich, K., Buetow, K. and Gesing, S. (2017) The ICTBioMed NCIP Hub: Cancer Research in a Science Gateway on World-Wide Scale IWSG 2017 (9th International Workshop on Science Gateways), 19-21 June 2017, Poznan, Poland |
| [103] | Löffler, F., Katz, D.S., Wilson, L.A., Gesing, S., McDougall, D., Carver, J., Brandt, S.R. (2017) Research Software Training Initiative: Identifying and addressing challenges in scientific software development Future Needs for Advanced Cyberinfrastructure to Support Science and Engineering Research (NSF CI 2030) |
| [102] | Katz, D.S., Haines, R., Huff, K., Löffler, F., Pierce, M., Heroux, M., Niemeyer, K., Gesing, S., Carver, J., Wilson, G. (2017) Sustaining Software as a Key Element of Cyberinfrastructure Future Needs for Advanced Cyberinfrastructure to Support Science and Engineering Research (NSF CI 2030) |
| [101] | Pierantoni, G., Frost, D., Gesing, S., Olabarriaga, S., Tertyanzsky, G., Jaghoori, M., and Arshad, J. (2017) A Model for Information and Action Flows Connecting Science Gateways to Distributed Computing Infrastructures Proc. of IWSG 2016 (8th International Workshop on Science Gateways), 8-10 June 2016, Rome, Italy, http://ceur-ws.org/Vol-1871/paper1.pdf |
| [100] | Gesing, S. and Krüger, J. (eds.) (2017) IWSG 2016 - International Workshop on Science Gateways 2016 CEUR Workshop Proceedings, online http://ceur-ws.org/Vol-1871/ |
| [99] | Atkinson, M.,Gesing, S., Montagnat, J. and Taylor, I. (2017) Scientific Workflows: Past, Present and Future Future Generation Computer Systems, volume 75, pages 216-227, 2017 |
| [98] | Atkinson, M.,Gesing, S., Montagnat, J. and Taylor, I. (eds.) (2017) Special Issue on Workflows in Support of Large-Scale Science Future Generation Computer Systems, volume 75, pages 216-437, 2017 |
| [97] | Wilkins-Diehr, N., Barker M. and Gesing, S. (2017) Science Gateways, Virtual Labs and Virtual Research Environments eResearch Conference Australasia 2016, 10-14 October 2016, Melbourne, Australia |
| [96] | Katz, D. S., Niemeyer, K. E., Gesing, S., Hwang, L., Bangerth, W., Hettrick, S., Idaszak, R., Salac, J., Chue Hong, N., Corrales, S. N., Allen, A., Geiger, R. S., Miller, J., Chen, E., Dubey, A., Lago, P. (2017) Report on the Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4) arXiv:1602.02296 [cs.SE] |
| [95] | Gesing, S., Zentner, M., Dahan, M. and Lawrence, K. (2017) Gateways to Science: Harnessing Big Data and Open Data for Precision Medicine Book of Abstracts - 2nd Personalized Medicine Conference, pages 55-57, 17 - 20 Mar 2017, Cancun, Mexico |
| [94] | Gesing, S. and Sakellariou, R. (eds.) (2017) WORKS 2016 - Workshop on Workflows in Support of Large-Scale Science CEUR Workshop Proceedings, ISSN 1613-0073. |
| [93] | Gesing, S., Carretero, J., Garcia Blas, J. and Montagnat, J. (2017) Boosting Analyses in the Life Sciences via Clusters, Grids and Clouds Future Generation Computer Systems, volume 67, pages 325-328, 2017 |
| [92] | Gesing, S., Carretero, J., Garcia Blas, J. and Montagnat, J. (eds.) (2017) Special issue of Boosting Analyses in the Life Sciences via Clusters, Grids and Clouds Future Generation Computer Systems, volume 67, pages 325-489, 2017 |
| [91] | Gesing, S., Wilkins-Diehr, N., Dahan, M., Lawrence, K., Zentner, M., Pierce, M., Hayden, L.B., and Marru, S. (2017) Science Gateways: The Long Road to the Birth of an Institute Proc. of HICSS-50 (50th Hawaii International Conference on System Sciences), 4-7 January 2017, Hilton Waikoloa, HI, USA, http://hdl.handle.net/10125/41919 |
| 2016 | |
|---|---|
| [90] | Gesing, S. (2016) Enabling Research without Geographical Boundaries via Collaborative Research Infrastructures AGU Fall Meeting, 12 - 16 December 2016, San Francisco, USA |
| [89] | Gesing, S., Wilkins-Diehr, N., Barker, M. and Pierantoni, G. (2016) Science Gateway Workshops 2015 Special Issue Conference Publications Journal of Grid Computing (2016), doi:10.1007/s10723-016-9389-4 |
| [88] | Gesing, S., Krüger, J., Grunzke, R., Herres-Pawlis, S. and Hoffmann, A. (2016) Using Science Gateways for Bridging the Differences between Research Infrastructures Journal of Grid Computing (2016), doi:10.1007/s10723-016-9385-8 |
| [87] | Gesing, S., Wilkins-Diehr, N., Barker, M. and Pierantoni, G. (eds.)(2016) Special Issue on Science Gateways Journal of Grid Computing, 14(4):495–703, 2016 |
| [86] | Arshad, J., Hoffmann, A., Gesing, S., Grunzke, R., Krüger, J., Kiss, T., Herres-Pawlis, S., Terstyanszky, G. (2016) Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry Journal of Cheminformatics (2016) 8: 58. doi:10.1186/s13321-016-0169-8 |
| [85] | Katz, D S, Choi, S-C T , Niemeyer, K E, Hetherington, J, Löffler, F, Gunter, D, Idaszak, R, Brandt, S R, Miller, M A, Gesing, S, Jones, N D, Weber, N, Marru, S, Allen, G, Penzenstadler, B, Venters, C C, Davis, E, Hwang, L, Todorov, I, Patra, A and de Val-Borro, M (2016) Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3) Journal of Open Research Software, 4: e37, DOI: http://dx.doi.org/10.5334/jors.118 |
| [84] | Krüger, J., Thiel, P., Merelli, I., Grunzke, R., and Gesing, S. (2016) Portals and Web-based Resources for Virtual Screening Current Drug Targets, volume 17, issue 14, pages 1649-1660, year 2016, doi: 10.2174/1389450117666160201105806 |
| [83] | Perez-Sanchez, H., Gesing, S. and Merelli, I. (2016) Editorial: High Performance Computing in Drug Discovery Current Drug Targets, volume 17, issue 14, pages 1578-1579, year 2016, doi: 10.2174/138945011714160930230542 |
| [82] | Perez-Sanchez, H., Gesing, S. and Merelli, I. (eds.) (2016) Special Issue: High Performance Computing in Drug Discovery Current Drug Targets, volume 17, issue 14, pages 1578-1703, year 2016 |
| [81] | Gesing, S., Dahan, M., Hayden, L.B., Lawrence, K., Marru, S., Pierce, M., Wilkins-Diehr, N. and Zentner, M. (2016) The Science Gateway Community Institute – Supporting Communities to Achieve Sustainability for their Science Gateways Proc. of WSSSPE4 (4th Workshop on Sustainable Software for Science: Practice and Experiences), 12 - 14 September 2016, Manchester, UK, CEUR Workshop Proceedings, ISSN 1613-0073. |
| [80] | Allen, G., Carver, J., Choi, S.T., Crick, T., Crusoe, M. R., Gesing, S., Haines, R., Heroux, M., Hwang, L.J., Katz, D.S., Niemeyer, K.E., Parashar, M., and Venters, C.C. (eds.) (2016) WSSSPE4 - Workshop on Sustainable Software for Science: Practice and Experiences CEUR Workshop Proceedings, ISSN 1613-0073. |
| [79] | Perez-Sanchez, H., Rezaei, V., Mezhuyev, V., Man, D., Pena-Garcia, J., den-Haan, H. and Gesing, S. (2016) Developing Science Gateways for Drug Discovery in a Grid Environment SpringerPlus 2016, 5(1):1-9, doi: 10.1186/s40064-016-2914-x |
| [78] | de la Garza, L., Veit, J., Szolek, A., Röttig, M., Aiche, S., Gesing, S., Reinert, K., and Kohlbacher, O (2016) From the Desktop to the Grid: scalable Bioinformatics via Workflow Conversion BMC Bioinformatics 2016, 17(1):127, DOI: 10.1186/s12859-016-0978-9 |
| [77] | Haydel, N., Gesing, S., Taylor, I., Madey, G., Dakkak, A., de Gonzalo, S. and Hwu, W. (2016) Enhancing the Usability and Utilization of Accelerated Architectures via Docker 2015 IEEE/ACM 8th International Conference on Utility and Cloud Computing (UCC), Limassol, 2015, pp. 361-367. doi: 10.1109/UCC.2015.57 |
| [76] | Ferguson, H. T., Gesing, S. and Nabrzyski, J. (2016) Measuring Usability in Decision Tools Supporting Collaborations for Environmental Disaster Response 2016 49th Hawaii International Conference on System Sciences (HICSS), Koloa, HI, USA, 2016, pp. 2872-2881. doi: 10.1109/HICSS.2016.360 |
| [75] | Katz, D.S., Choi, S.T., Neimeyer, K.E., Hetherington, J., Löffler, F., Gunter, D., Idaskak, R., Brandt, S.R., Miller, M.A., Gesing, S., Jones, N.D., Weber, N., Marru, S., Allen, G., Penzzenstadler, B., Venters, C.C., Davis, E., Hwnag, L., Todorov, I., Patra, A., and De Val-Borro, M. (2016) Report on the Third Workshop on Sustainable Software for Science: Practice and Experience (WSSSPE3) arXiv:1602.02296 [cs.SE] |
| 2015 | |
|---|---|
| [74] | Gesing, S. and Wilkins-Diehr, N. (2015) Science gateway workshops 2014 special issue conference publications Concurrency Computation: Practice and Experience, 27(16):4247–4251, doi: 10.1002/cpe.3615 |
| [73] | Carretero, J., Garcia-Blas, J., and Gesing, S. (2015) Introduction to the Special Issue on Cloud for Health Scalable Computing: Practice and Experience, Vol. 16, No 1 (2015) |
| [72] | Wilkins-Diehr, N., Gesing, S., and Kiss, T. (2015) Science gateway workshops 2013 special issue conference publications Concurrency Computation: Practice and Experience, 27(2):253–257, doi: 10.1002/cpe.3362 |
| [71] | Herres-Pawlis, S., Hoffmann, A., Balasko, A., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Kacsuk, P., Krüger, J., Terstyansky, G., and Weingarten, N. (2015) Quantum chemical metaworkflows in MoSGrid Concurrency and Computation: Practice and Experience, 27(2):344–357, doi: 10.1002/cpe.3292 |
| [70] | Gesing, S., Connor, T.R. and Taylor, I. (2015) Genomics and Biological Big Data: Facing Current and Future Challenges around Data and Software Sharing and Reproducibility Position paper at BDAC-15 (Big Data Analytics: Challenges and Opportunities), workshop in cooperation with ACM/IEEE SC15, November 16, 2015, Austin, TX, USA, arXiv:1511.02689 [cs.DC] |
| [69] | McGilvary, G., Atkinson, M., Gesing, S., Aguilera, A., Grunzke, R., and Sciacca, E. (2015) Enhanced Usability of Managing Workflows in an Industrial Data Gateway e-Science (e-Science), 2015 IEEE 11th International Conference on, pp.495-502, Aug. 31 2015-Sept. 4 2015. doi: 10.1109/eScience.2015.62 |
| [68] | Grunzke, R., Krüger, J., Gesing, S., Herres-Pawlis, S., Hoffmann, A., Aguilera, A. and Nagel, W.E. (2015) Managing Complexity in Distributed Data Life Cycles Enhancing Scientific Discovery e-Science (e-Science), 2015 IEEE 11th International Conference on, pp.371-380, Aug. 31 2015-Sept. 4 2015. doi: 10.1109/eScience.2015.72 |
| [67] | Hazekamp, N., Sarro, J., Choudhury, O., Gesing, S., Scott Emrich and Thain, D. (2015) Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow e-Science (e-Science), 2015 IEEE 11th International Conference on, pp.332-341, Aug. 31 2015-Sept. 4 2015. doi: 10.1109/eScience.2015.39 |
| [66] | Choudhury, O., Rajan, D., Hazekamp, N., Gesing, S., Thain, D., and Emrich, S. (2015) Balancing Thread-level and Task-level Parallelism for Data-Intensive Workloads on Clusters and Clouds Cluster Computing (CLUSTER), 2015 IEEE International Conference on, pp.390-393, 8-11 Sept. 2015. doi:10.1109/CLUSTER.2015.60 |
| [65] | Gesing, S. (2015) Developing Science Gateways: Current Solutions and Future Challenges IWSG-A (International Workshop on Science Gateways - Australia), 19 Oct, 2015, Brisbane, Australia |
| [64] | Gesing, S., Dooley, R., Pierce, M., Krüger, J., Grunzke, R., Herres-Pawlis, S., and Hoffmann, A. (2015) Science Gateways - Leveraging Modeling and Simulations in HPC Infrastructures via Increased Usability High Performance Computing & Simulation (HPCS), 2015 International Conference on, pp.19-26, 20-24 July 2015, doi: 10.1109/HPCSim.2015.7237017 |
| [63] | Gesing, S., Krüger, J., Grunzke, R., Herres-Pawlis, S., and Hoffmann, A. (2015) Challenges and Modifications for Creating a MoSGrid Science Gateway for US and European Infrastructures Science Gateways (IWSG), 2015 7th International Workshop on, pp.73-79, 3-5 June 2015, IEEE Xplore, doi: 10.1109/IWSG.2015.10 |
| [62] | Herres-Pawlis, S., Hoffmann, A., Rösener, T., Krüger, J., Grunzke, R., and Gesing, S. (2015) Multi-layer Meta-metaworkflows for the Evaluation of Solvent and Dispersion Effects in Transition Metal Systems Using the MoSGrid Science Gateways Science Gateways (IWSG), 2015 7th International Workshop on, pp.47-52, 3-5 June 2015, IEEE Xplore, doi: 10.1109/IWSG.2015.13 |
| [61] | Pierantoni, G. and Gesing, S. (2015) Editorial: Science Gateways - Theoretical Approaches, Cutting-Edge Developments and Versatile Use Cases Science Gateways (IWSG), 2015 7th International Workshop on, pp. vii-viii, IEEE Xplore |
| [60] | Samual, T.K., Wan, S., Conveney, P.V., Riedel, M., Memon, S., Gesing, S., and Wilkins-Diehr, N. (2015) Overview of XSEDE-PRACE Collaborative Projects in 2014 In Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure (XSEDE '15). ACM, New York, NY, USA, , Article 24 , 8 pages. DOI=10.1145/2792745.2792769 |
| [59] | Lengauer, C., Bouge, L., Silva, F., Li, Z., Li, K., Gesing, S. and Wilkins-Diehr, S. (eds.) (2015) Special Issue: Combined Special Issues on EuroPar 2014, Recent advances in parallel computing and distributed network (U-Science 2014) and Science gateway workshops (SGW 2014) Concurrency Computation: Practice and Experience, 27(16):4073–4490 |
| [58] | Carretero, J., Garcia-Blas, J., and Gesing, S. (eds.) (2015) Special Issue on Cloud for Health Scalable Computing: Practice and Experience, Vol. 16, No 1 (2015) |
| [57] | Wilkins-Diehr, N., Gesing, S., and Kiss, T. (eds.) (2015) Special Issue on Science Gateway Workshops 2013 (SGW 2013) Concurrency Computation: Practice and Experience, 27(2):253–506 |
| [56] | Pierantoni, G. and Gesing, S. (eds.) (2015) 7th International Workshop on Science Gateways (IWSG), 2015 IEEE Xplore |
| [55] | Hoffmann, A., Krüger, J., Grunzke, R., Packschies, L., Gesing, S. and Herres-Pawlis, S. (2015) Quantum Chemical Workflows in the MoSGrid Science Gateway 10th European Conference on Computational Chemistry, Fulda, Germany |
| 2014 | |
|---|---|
| [54] | Giraldo-Calderon, G., Emrich, S., MacCallum, R., Maslen, G., Dialynas, E., Topalis, P., Ho, N., Gesing, S., the VectorBase Consortium, Madey, G., Collins, F., and Lawson, D. (2014) VectorBase: an updated bioinformatics resource for invertebrate vectors of human pathogens Nucleic Acids Research, doi:10.1093/nar/gku1117 |
| [53] | Merelli, I., Pérez-Sánchez, H., Gesing, S. and D'Agostino, D. (2014) Managing, Analysing and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives BioMed Research International, Volume 2014 (2014), Article ID 134023, 13 pages, doi:10.1155/2014/134023 |
| [52] | Krüger, J., Grunzke, R., Herres-Pawlis, S., Hoffmann, A., de la Garza, L., Kohlbacher, O., Nagel, W.E., and Gesing, S. (2014) Performance Studies on Distributed Virtual Screening BioMed Research International, vol. 2014, Article ID 624024, 7 pages, doi:10.1155/2014/624024 |
| [51] | Merelli, I., Pérez-Sánchez, H., Gesing, S., and D'Agostino, D. (2014) Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology Concurrency and Computation: Practice and Experience, 26(10): 1699–1704. |
| [50] | Grunzke, R., Breuers, S., Gesing, S., Herres-Pawlis, S., Kruse, M., Blunk, D., de la Garza, L., Packschies, L., Schäfer, P., Schärfe, C., Schlemmer, T., Steinke, T., Schuller, B., Müller-Pfefferkorn, R., Nagel, W., Atkinson, M., and Krüger, J. (2014) Standards-based Metadata Management for Molecular Simulations Concurrency and Computation: Practice and Experience, 26(10): 1744–1759. |
| [49] | Krüger, J.*, Grunzke, R.*, Gesing, S.*, Breuers, S., Brinkmann, A., de la Garza, L., Kohlbacher, O., Kruse, M., Nagel, W.E., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Schärfe, C., Steinke, T., Schlemmer, T., Warzecha, K., Zink, A., and Herres-Pawlis, S. (2014) The MoSGrid Science Gateway – A Complete Solution for Molecular Simulations Journal of Chemical Theory and Computation, 10(6): 2232–2245, DOI: 10.1021/ct500159h |
| [48] | Gesing, S., Nabrzyski, J., and Jha, S. (2014) Gateways to High-Performance and Distributed Computing Resources for Global Health Challenges Humanitarian Technology Conference - (IHTC), 2014 IEEE Canada International, pp.1,5, 1-4 June 2014, doi: 10.1109/IHTC.2014.7147530 |
| [47] | Mazurek, C., Pukacki, J., Kosiedowski, M., Trocha, S., Darbari, H., Saxena, A., Joshi, R., Brenner, P., Gesing, S., Nabrzyski, J., Sullivan, M., Dubhashi, D., Thankaswamy, S., and Srivastava, A. (2014) Federated Clouds for Biomedical Research: Integrating OpenStack for ICTBioMed Cloud Networking (CloudNet), 2014 IEEE 3rd International Conference on, pp.294-299, 8-10 Oct. 2014, doi: 10.1109/CloudNet.2014.6969011 |
| [46] | Hayashi, S., Gesing, S., Quick, R., Teige, S., Ganote, C., Wu, L., and Prout, E. (2014) Galaxy based BLAST submission to distributed national high throughput computing resources Proceedings of Science, PoS(ISGC2014)025 |
| [45] | Gesing, S., Atkinson, M., Filgueira, R., Taylor, I., Jones, A., Stankovski, V., Liew, C., Spinuso, A., Terstyanszky, G., and Kacsuk, P. (2014) Workflows in a Dashboard: A New Generation of Usability In: Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science, pp. 82-93, November 2014, New Orleans, LA, USA |
| [44] | Nabrzyski, J., Liu, C., Vardeman, C., Gesing, S., and Budhatoki, M. (2014) Agriculture Data for All: Integrated Tools for Agriculture Data Integration, Analytics and Sharing Big Data (BigData Congress), 2014 IEEE International Congress on, pp.774-775, doi: 10.1109/BigData.Congress.2014.117 |
| [43] | Herres-Pawlis, S., Hoffmann, A., de la Garza, L., Krüger, J., Grunzke, R., Gesing, S., Weingarten, N., and Terstyansky, G. (2014) Meta-metaworkflows for Combining Quantum Chemistry and Molecular Dynamics in the MoSGrid Science Gateway Science Gateways (IWSG), 2014 6th International Workshop on, pp. 73-78, IEEE Xplore |
| [42] | Gesing, S., Kiss, T. and Pierantoni, G. (2014) Editorial: Science Gateways Applying Clouds, Grids and HPC Science Gateways (IWSG), 2014 6th International Workshop on, pp. vii-ix, IEEE Xplore |
| [41] | Hazekamp, N., Choudhury, O., Gesing, S., Thain, D., and Emrich, S. (2014) Expanding Tasks of Logical Workflows into Independent Workflows for Improved Scalability Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on, pp. 548-549, doi: 10.1109/CCGrid.2014.84 |
| [40] | Grunzke, R., Jäkel, R., Nagel, W.E. and Gesing, S.(2014) Towards Generic Metadata Management in Distributed Science Gateway Infrastructures Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on, pp. 566-570, doi: 10.1109/CCGrid.2014.98 |
| [39] | Grunzke, R., Gesing, S., de la Garza, L., Hoffmann, A., Herres-Pawlis, S., and Krüger, J. (2014) Improved Resilience and Usability for Science Gateway Infrastructures via Integrated Virtual Organizations In: EGI Community Forum 2014, Helsinki, Finland, May 2014 |
| [38] | Grunzke, R., Hesser, J., Starek, J., Kepper, N., Gesing, S., Hardt, M., Hartmann, V., Kindermann, S., Potthoff, J., Hausmann, M., Müller-Pfefferkorn, R., and Jäkel, R. (2014) Device-driven Metadata Management Solutions for Scientific Big Data Use Cases Parallel, Distributed and Network-Based Processing (PDP), 2014 22nd Euromicro International Conference on , pp.317-321, 12-14 Feb. 2014, doi: 10.1109/PDP.2014.119 |
| [37] | Kofler, K., Davis, G., and Gesing, S. (2014) SAMPO: An Agent-based Mosquito Point Model in OpenCL Agent-Directed Simulation Symposium (ADS 2014), Simulation Series Vol 46 #1, pp. 36-45, Curran Associates, Inc., ISBN 9781629939469 |
| [36] | Gesing, S., Krüger, J., Grunzke, R., de la Garza, L., Herres-Pawlis, S., and Hoffmann, A. (2014) Molecular Simulation Grid (MoSGrid): A Science Gateway Tailored to the Molecular Simulation Community In: Science Gateways for Distributed Computing Infrastructures, pp. 151-165, ISBN 978-3-319-11267-1, Springer International Publishing |
| [35] | Merelli, I., Pérez-Sánchez, H., Gesing, S. and D'Agostino, D. (eds.) (2014) High-Performance Computing and Big Data in Omics-based Medicine Special issue in BioMed Research International 2014 |
| [34] | Merelli, I., Pérez-Sánchez, H., Gesing, S., and D'Agostino, D. (eds.) (2014) Special issue on COMPBIO 2013 Concurrency and Computation: Practice and Experience, 26(10): 1699–1846. |
| [33] | Gesing, S. and Kiss, T. (eds.) (2014) 6th International Workshop on Science Gateways (IWSG), 2014 IEEE Xplore |
| 2013 | |
|---|---|
| [32] | Gesing, S., Atkinson, M., Klampanos, I., Galea, M., Berthold, M. R., Barbera, R., Scardaci, D., Terstyanszky, G., Kiss, T., and Kacsuk, P. (2013) The Demand for Consistent Web-Based Workflow Editors In: Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science, pp. 112-123, November 17-22, 2013, Denver, CO, USA, ISBN 978-1-4503-2502-8. |
| [31] | Herres-Pawlis, S., Hoffmann, A., Gesing, S., de la Garza, L., Krüger, J. and Grunzke, R. (2013) User-friendly metaworkflows in quantum chemistry Cluster Computing (CLUSTER), 2013 IEEE International Conference on , pp.1-3, 23-27 Sept. 2013, DOI: http://doi.ieeecomputersociety.org/10.1109/CLUSTER.2013.6702700 |
| [30] | Herres-Pawlis, S., Balasko, A., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Hoffmann, A., Kacsuk, P., Krüger, J., Packschies, L., Terstyansky, G., and Weingarten, N. (2013) User-friendly workflows in quantum chemistry Proc. of 5th Workshop IWSG 2013, June 3-5 2013, Zurich, Switzerland, CEUR Workshop Proceedings, ISSN 1613-0073, 2013. |
| [29] | Packschies, L., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., de la Garza, L., dos Santos Vieira, I., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Kruse, M., Lang, U., Müller-Pfefferkorn, R., Schäfer, P., Schlemmer, T., Schärfe, C., Steinke, T., Warzecha, K., and Zink, A. (2013) The MoSGrid-e-Science Gateway: Molecular Simulations in a Distributed Computing Environment Journal of Cheminformatics 2013, 5(Suppl 1):O3, doi:10.1186/1758-2946-5-S1-O3 |
| [28] | Gesing, S. (2013) Web-based Science Gateways for Structural Bioinformatics PhD thesis, University of Tübingen |
| 2012 | |
|---|---|
| [27] | Gesing, S.*, Grunzke, R.*, Krüger, J., Birkenheuer, G., Wewior, M., Schäfer, P., Schuller, B., Schuster, J., Herres-Pawlis, S., Breuers, S., Balasko, A., Kozlovszky, M., Szikszay Fabri, A., Packschies, L., Kacsuk, P., Blunk, D., Steinke, T., Brinkmann, A., Fels, G., Müller-Pfefferkorn, R., Jäkel, R., and Kohlbacher, O. (2012) A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics Journal of Grid Computing, 10(4):769-790. |
| [26] | Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., dos Santos Vieira, I., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Lang, U., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Steinke, T., Warzecha K., and Wewior, M. (2012). MoSGrid: Efficient Data Management and a Standardized Data Exchange Format for Molecular Simulations in a Grid Environment Journal of Cheminformatics 2012, 4(Suppl 1):P21, doi:10.1186/1758-2946-4-S1-P21 |
| [25] | Gesing, S., Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T. (2012) A Science Gateway Getting Ready for Serving the International Molecular Simulation Community Proceedings of Science, PoS(EGICF12-EMITC2)050 |
| [24] | Grunzke, R., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Gesing, S., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Kruse, M., Müller-Pfefferkorn, R., Schäfer, P., Schuller, B., Steinke, T., and Zink, A. (2012) A Data Driven Science Gateway for Computational Workflows In: UNICORE Summit 2012, Dresden, Germany, May 2012, IAS Series Vol.15, p. 35-49. |
| [23] | Schlemmer, T.*, Grunzke, R.*, Gesing, S.*, Krüger, J., Birkenheuer, G., Müller-Pfefferkorn, R., and Kohlbacher, O. (2012) Generic User Management for Science Gateways via Virtual Organizations In: EGI Technical Forum 2012, Prague, Czech Republic, September 2012. |
| [22] | Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Jäkel, R., Kohlbacher, O., Krüger, J., and Dos Santos Vieira, I. (2012) Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway Studies in Health Technology and Informatics, 175:142-151, IOS Press. |
| [21] | Gesing, S. and Krüger, J. (2012) Workshop Series IWSG-Life Studies in Health Technology and Informatics, 175:115-118, IOS Press. |
| [20] | Gesing, S., Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T. (2012) The MoSGrid Community - From National to International Scale In: EGI Community Forum 2012, Munich, Germany, March 2012. |
| [19] | Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Lang, U., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Schuster, J., Steinke, T., Warzecha, K., and Wewior, M. (2012) MoSGrid: Progress of Workflow driven Chemical Simulations Proc. of Grid Workflow Workshop 2011, Cologne, Germany, March 4, 2011, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-826/paper02.pdf |
| [18] | Gesing, S., Glatard, T., Krüger, J., Delgado Olabarriaga, S., Solomonides, T., Silverstein, J., Montagnat, J., Gaignard, A., and Krefting, D. (eds.) (2012) HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences Studies in Health Technology and Informatics, Volume 175, IOS Press. |
| 2011 | |
|---|---|
| [17] | Gesing, S., Hemert, J. v., Kacsuk, P. and Kohlbacher, O. (2011) Special Issue: Portals for life sciences—Providing intuitive access to bioinformatic tools. Concurrency and Computation: Practice and Experience, 23: 223–234. DOI: http://dx.doi.org/10.1002/cpe.1687 |
| [16] | Krüger, J., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Gesing, S., Grunzke, R., Kohlbacher, O., Kruber, N., Lang, U., Packschies, L., Müller-Pfefferkorn, R., Herres-Pawlis, S., Schäfer, P., Schmalz, H., Steinke, T., Warzecha, K., and Wewior, M. (2011). Molecular simulation grid. Journal of Cheminformatics 2011, 3(Suppl 1):O17, doi:10.1186/1758-2946-3-S1-O17 |
| [15] | Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., dos Santos Vieira, I., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Lang, U., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Schmalz, H., Steinke, T., Warzecha, K., and Wewior, M. (2011). A Molecular Simulation Grid as new tool for Computational Chemistry, Biology and Material Science. Journal of Cheminformatics 2011, 3(Suppl 1):P14, doi:10.1186/1758-2946-3-S1-P14 |
| [14] | Gesing, S.*, Grunzke, R.*, Balasko, A., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Herres-Pawlis, S., Kacsuk, P., Kozlovszky, M., Krüger, J., Packschies, L., Schäfer, P., Schuller, B., Schuster, J., Steinke, T., Szikszay Fabri, A., Wewior, M., Müller-Pfefferkorn, R., and Kohlbacher, O. (2011). Granular Security for a Science Gateway in Structural Bioinformatics Proc. of 3rd Workshop IWSG-Life 2011, London, UK, June 8-10, 2011, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-819/paper8.pdf. |
| [13] | Gesing, S., Kacsuk, P., Kozlovszky, M., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Grunzke, R., Herres-Pawlis, S., Krüger, J., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Steinke, T., Szikszay Fabri, A., Warzecha, K., Wewior, M., and Kohlbacher, O. (2011) A Science Gateway for Molecular Simulations. In: EGI User Forum 2011, Book of Abstracts, pp. 94--95, ISBN 978 90 816927 1 7. |
| [12] | Gesing, S. and van Hemert, J.I. (eds.) (2011) Special Issue: IWPLS 2009 Concurrency and Computation: Practice and Experience, 23: 223–291. |
| 2010 | |
|---|---|
| [11] | Gesing, S, van Hemert, J.I., Koetsier, J., Bertsch, A, and Kohlbacher, O (2010) TOPP goes Rapid—The OpenMS Proteomics Pipeline in a Grid-enabled Web Portal CCGrid, pp.598-599, 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, 2010. DOI: http://doi.ieeecomputersociety.org/10.1109/CCGRID.2010.39 |
| [10] | Gesing, S., Marton, I., Birkenheuer, G., Schuller, B., Grunzke, R., Krüger, J., Breuers, S., Blunk, D., Fels, G., Packschies, L., Brinkmann, A., Kohlbacher, O., and Kozlovszky, M. (2010) Workflow Interoperability in a Grid Portal for Molecular Simulations In: Proceedings of the International Workshop on Science Gateways (IWSG2010), pp. 44-48, Consorzio COMETA, ISBN: 978-88-95892-03-0. |
| [9] | Wewior, M., Packschies, L., Blunk, D., Wickeroth, D., Warzecha, K., Herres-Pawlis, S., Gesing, S., Breuers, S., Krüger, J., Birkenheuer, G., and Lang, U.(2010) The MoSGrid Gaussian portlet -- Technologies for Implementation of Portlets for Molecular Simulations In: Proceedings of the International Workshop on Science Gateways (IWSG2010), pp. 39-43, Consorzio COMETA, ISBN: 978-88-95892-03-0. |
| [8] | Krüger, J., Birkenheuer, G., Breuers, S., Gesing, S., Wewior, M., Brinkmann, A., Blunk, D., Kohlbacher, O., Packschies, L., and Fels, G. (2010) Workflows and Analysis Approaches for Molecular Dynamics Simulations In: Proceedings of the International Workshop on Science Gateways (IWSG2010), pp. 61, Consorzio COMETA, ISBN: 978-88-95892-03-0. |
| [7] | Birkenheuer, G, Breuers, S, Brinkmann, A, Blunk, D, Fels, G, Gesing, S, Herres-Pawlis, S, Kohlbacher, O, Krüger, J, and Packschies, L (2010) Grid-Workflows in Molecular Science Software Engineering 2010, Grid Workflow Workshop, pp. 177-184, GI-Edition - Lecture Notes in Informatics (LNI), P-160, ISSN 1617-5468, 2010. |
| 2009 | |
|---|---|
| [6] | Schneeberger, K.*, Hagmann, J.*, Ossowski, S.*, Warthmann, N., Gesing, S., Kohlbacher, O., and Weigel, D. (2009). Simultaneous alignment of short reads against multiple genomes Genome Biology, 10(9):R98. |
| [5] | Gesing, S, Kohlbacher, O, and van Hemert, J.I. (2009) Portals for Life Sciences - a Brief Introduction Proc. of 1st Workshop IWPLS'09, Edinburgh, UK, September 14-15, 2009, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-513/paper01.pdf |
| [4] | Gesing, S. and van Hemert, J.I. (eds.) (2009) Proceedings of the International Workshop on Portals for Life Sciences 2009 (IWPLS'09) CEUR Workshop Proceedings, ISSN 1613-0073. |
| 2007 | |
|---|---|
| [3] | Gesing, S. and Kohlbacher, O. (2007). Generic Portlets for Bioinformatics in a Grid Infrastructure. ISMB 2007, Vienna, Austria |
| 2006 | |
|---|---|
| [2] | Quenzer, M., Gesing, S., and Kohlbacher, O. (2006). A Workflow enabled Portal for Bioinformatics in a Grid infrastructure. GCB 2006, Tübingen, Germany |
| 2005 | |
|---|---|
| [1] | Gesing, S. (2005) Approximation von Punktmengen durch Kreise (Abstract: Approximating a set of points by circles) Diploma thesis, FernUniversität Hagen |
[accepted] [2024] [2023] [2022] [2021] [2020] [2019] [2018] [2017] [2016] [2015] [2014] [2013] [2012] [2011] [2010] [2009] [2007] [2006] [2005]