Peer-reviewed conferences

[accepted] [2017] [2016] [2015] [2014] [2013] [2012] [2011] [2010] [2009]

*These authors contributed equally to the respective work.

accepted
[C54]Gesing, S., Lawrence, K., Wilkins-Diehr, N., Dahan, M., Zentner, M., Pierce, M. (accepted)
Short Paper: Science Gateways: Sustainability via On-Campus Teams
Gateways 2017, 23-25 October, Ann Arbor, USA
[C53]Gesing, S., Zentner, M., Casavan, J., Hillery, B., Vorvoreanu, M., Heiland, R., Marru, S., Pierce, M., Mullinix, N., Maron, N. (accepted)
Science Gateways Incubator: Software Sustainability Meets Community Needs
WSSSPE 5.2 (Working Towards Sustainable Software for Science: Practice and Experiences), 24 October 2017, Auckland, New Zealand
[C52]Gesing, S., Zentner, M., Casavan, J., Heiland, R., Hillery, B., Marru, S., Pierce, M., Maron, N., Mullinix, N., Vorvoreanu, M. (accepted)
Science Gateways Bootcamp: Strategies for Developing, Operating and Sustaining Science Gateways
IWSG-A 2017 (International Workshop on Science Gateways - Australia), 16-17 October 2017, Brisbane, Australia
[C51]Gesing, S., Wilkins-Diehr, N., Dahan, M., Zentner, M. and Lawrence, K.(accepted)
The Science Gateways Community Institute: Going Beyond Borders
IWSG 2017 (9th International Workshop on Science Gateways), 19-21 June 2017, Poznan, Poland

2017
[C50]Saxena, A., Joshi, R., Darbari, H., Mazurek, C., Bhat, A., Srivastava, A., Wojkovich, K., Buetow, K. and Gesing, S. (2017)
The ICTBioMed NCIP Hub: Cancer Research in a Science Gateway on World-Wide Scale

IWSG 2017 (9th International Workshop on Science Gateways), 19-21 June 2017, Poznan, Poland
[C49]Pierantoni, G., Frost, D., Gesing, S., Olabarriaga, S., Tertyanzsky, G., Jaghoori, M., and Arshad, J. (2017)
A Model for Information and Action Flows Connecting Science Gateways to Distributed Computing Infrastructures

Proc. of IWSG 2016 (8th International Workshop on Science Gateways), 8-10 June 2016, Rome, Italy, http://ceur-ws.org/Vol-1871/paper1.pdf
[C48]Wilkins-Diehr, N., Barker M. and Gesing, S. (2017)
Science Gateways, Virtual Labs and Virtual Research Environments

eResearch Conference Australasia 2016, 10-14 October 2016, Melbourne, Australia
[C47]Gesing, S., Zentner, M., Dahan, M. and Lawrence, K. (2017)
Gateways to Science: Harnessing Big Data and Open Data for Precision Medicine

Book of Abstracts - 2nd Personalized Medicine Conference, pages 55-57, 17 - 20 Mar 2017, Cancun, Mexico
[C46]Gesing, S., Wilkins-Diehr, N., Dahan, M., Lawrence, K., Zentner, M., Pierce, M., Hayden, L.B., and Marru, S. (2017)
Science Gateways: The Long Road to the Birth of an Institute
Proc. of HICSS-50 (50th Hawaii International Conference on System Sciences), 4-7 January 2017, Hilton Waikoloa, HI, USA, http://hdl.handle.net/10125/41919

2016
[C45]Gesing, S. (2016)
Enabling Research without Geographical Boundaries via Collaborative Research Infrastructures
AGU Fall Meeting, 12 - 16 December 2016, San Francisco, USA
[C44]Gesing, S., Dahan, M., Hayden, L.B., Lawrence, K., Marru, S., Pierce, M., Wilkins-Diehr, N. and Zentner, M. (2016)
The Science Gateway Community Institute – Supporting Communities to Achieve Sustainability for their Science Gateways
Proc. of WSSSPE4 (4th Workshop on Sustainable Software for Science: Practice and Experiences), 12 - 14 September 2016, Manchester, UK, CEUR Workshop Proceedings, ISSN 1613-0073.
[C43]Haydel, N., Gesing, S., Taylor, I., Madey, G., Dakkak, A., de Gonzalo, S. and Hwu, W. (2016)
Enhancing the Usability and Utilization of Accelerated Architectures via Docker
2015 IEEE/ACM 8th International Conference on Utility and Cloud Computing (UCC), Limassol, 2015, pp. 361-367. doi: 10.1109/UCC.2015.57
[C42]Ferguson, H. T., Gesing, S. and Nabrzyski, J. (2016)
Measuring Usability in Decision Tools Supporting Collaborations for Environmental Disaster Response
2016 49th Hawaii International Conference on System Sciences (HICSS), Koloa, HI, USA, 2016, pp. 2872-2881. doi: 10.1109/HICSS.2016.360

2015
[C41]Gesing, S., Connor, T.R. and Taylor, I. (2015)
Genomics and Biological Big Data: Facing Current and Future Challenges around Data and Software Sharing and Reproducibility
Position paper at BDAC-15 (Big Data Analytics: Challenges and Opportunities), workshop in cooperation with ACM/IEEE SC15, November 16, 2015, Austin, TX, USA, arXiv:1511.02689 [cs.DC]
[C40]McGilvary, G., Atkinson, M., Gesing, S., Aguilera, A., Grunzke, R., and Sciacca, E. (2015)
Enhanced Usability of Managing Workflows in an Industrial Data Gateway
e-Science (e-Science), 2015 IEEE 11th International Conference on, pp.495-502, Aug. 31 2015-Sept. 4 2015. doi: 10.1109/eScience.2015.62
[C39]Grunzke, R., Krüger, J., Gesing, S., Herres-Pawlis, S., Hoffmann, A., Aguilera, A. and Nagel, W.E. (2015)
Managing Complexity in Distributed Data Life Cycles Enhancing Scientific Discovery
e-Science (e-Science), 2015 IEEE 11th International Conference on, pp.371-380, Aug. 31 2015-Sept. 4 2015. doi: 10.1109/eScience.2015.72
[C38]Hazekamp, N., Sarro, J., Choudhury, O., Gesing, S., Scott Emrich and Thain, D. (2015)
Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow
e-Science (e-Science), 2015 IEEE 11th International Conference on, pp.332-341, Aug. 31 2015-Sept. 4 2015. doi: 10.1109/eScience.2015.39
[C37]Choudhury, O., Rajan, D., Hazekamp, N., Gesing, S., Thain, D., and Emrich, S. (2015)
Balancing Thread-level and Task-level Parallelism for Data-Intensive Workloads on Clusters and Clouds
Cluster Computing (CLUSTER), 2015 IEEE International Conference on, pp.390-393, 8-11 Sept. 2015. doi:10.1109/CLUSTER.2015.60
[C36]Gesing, S. (2015)
Developing Science Gateways: Current Solutions and Future Challenges
IWSG-A (International Workshop on Science Gateways - Australia), 19 Oct, 2015, Brisbane, Australia
[C35]Gesing, S., Dooley, R., Pierce, M., Krüger, J., Grunzke, R., Herres-Pawlis, S., and Hoffmann, A. (2015)
Science Gateways - Leveraging Modeling and Simulations in HPC Infrastructures via Increased Usability
High Performance Computing & Simulation (HPCS), 2015 International Conference on, pp.19-26, 20-24 July 2015, doi: 10.1109/HPCSim.2015.7237017
[C34]Gesing, S., Krüger, J., Grunzke, R., Herres-Pawlis, S., and Hoffmann, A. (2015)
Challenges and Modifications for Creating a MoSGrid Science Gateway for US and European Infrastructures
Science Gateways (IWSG), 2015 7th International Workshop on, pp.73-79, 3-5 June 2015, IEEE Xplore, doi: 10.1109/IWSG.2015.10
[C33]Herres-Pawlis, S., Hoffmann, A., Rösener, T., Krüger, J., Grunzke, R., and Gesing, S. (2015)
Multi-layer Meta-metaworkflows for the Evaluation of Solvent and Dispersion Effects in Transition Metal Systems Using the MoSGrid Science Gateways
Science Gateways (IWSG), 2015 7th International Workshop on, pp.47-52, 3-5 June 2015, IEEE Xplore, doi: 10.1109/IWSG.2015.13
[C32]Pierantoni, G. and Gesing, S. (2015)
Editorial: Science Gateways - Theoretical Approaches, Cutting-Edge Developments and Versatile Use Cases
Science Gateways (IWSG), 2015 7th International Workshop on, pp. vii-viii, IEEE Xplore
[C31]Samual, T.K., Wan, S., Conveney, P.V., Riedel, M., Memon, S., Gesing, S., and Wilkins-Diehr, N. (2015)
Overview of XSEDE-PRACE Collaborative Projects in 2014
In Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure (XSEDE '15). ACM, New York, NY, USA, , Article 24 , 8 pages. DOI=10.1145/2792745.2792769

2014
[C30]Gesing, S., Nabrzyski, J., and Jha, S. (2014)
Gateways to High-Performance and Distributed Computing Resources for Global Health Challenges
Humanitarian Technology Conference - (IHTC), 2014 IEEE Canada International, pp.1,5, 1-4 June 2014, doi: 10.1109/IHTC.2014.7147530
[C29]Mazurek, C., Pukacki, J., Kosiedowski, M., Trocha, S., Darbari, H., Saxena, A., Joshi, R., Brenner, P., Gesing, S., Nabrzyski, J., Sullivan, M., Dubhashi, D., Thankaswamy, S., and Srivastava, A. (2014)
Federated Clouds for Biomedical Research: Integrating OpenStack for ICTBioMed
Cloud Networking (CloudNet), 2014 IEEE 3rd International Conference on, pp.294-299, 8-10 Oct. 2014, doi: 10.1109/CloudNet.2014.6969011
[C28]Hayashi, S., Gesing, S., Quick, R., Teige, S., Ganote, C., Wu, L., and Prout, E. (2014)
Galaxy based BLAST submission to distributed national high throughput computing resources
Proceedings of Science, PoS(ISGC2014)025
[C27]Gesing, S., Atkinson, M., Filgueira, R., Taylor, I., Jones, A., Stankovski, V., Liew, C., Spinuso, A., Terstyanszky, G., and Kacsuk, P. (2014)
Workflows in a Dashboard: A New Generation of Usability
In: Proceedings of the 9th Workshop on Workflows in Support of Large-Scale Science, pp. 82-93, November 2014, New Orleans, LA, USA
[C26]Nabrzyski, J., Liu, C., Vardeman, C., Gesing, S., and Budhatoki, M. (2014)
Agriculture Data for All: Integrated Tools for Agriculture Data Integration, Analytics and Sharing
Big Data (BigData Congress), 2014 IEEE International Congress on, pp.774-775,
doi: 10.1109/BigData.Congress.2014.117
[C25]Herres-Pawlis, S., Hoffmann, A., de la Garza, L., Krüger, J., Grunzke, R., Gesing, S., Weingarten, N., and Terstyansky, G. (2014)
Meta-metaworkflows for Combining Quantum Chemistry and Molecular Dynamics in the MoSGrid Science Gateway
Science Gateways (IWSG), 2014 6th International Workshop on, pp. 73-78, IEEE Xplore
[C24]Gesing, S., Kiss, T. and Pierantoni, G. (2014)
Editorial: Science Gateways Applying Clouds, Grids and HPC
Science Gateways (IWSG), 2014 6th International Workshop on, pp. vii-ix, IEEE Xplore
[C23]Hazekamp, N., Choudhury, O., Gesing, S., Thain, D., and Emrich, S. (2014)
Expanding Tasks of Logical Workflows into Independent Workflows for Improved Scalability
Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on, pp. 548-549, doi: 10.1109/CCGrid.2014.84
[C22]Grunzke, R., Jäkel, R., Nagel, W.E. and Gesing, S.(2014)
Towards Generic Metadata Management in Distributed Science Gateway Infrastructures
Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on, pp. 566-570, doi: 10.1109/CCGrid.2014.98
[C21]Grunzke, R., Gesing, S., de la Garza, L., Hoffmann, A., Herres-Pawlis, S., and Krüger, J. (2014)
Improved Resilience and Usability for Science Gateway Infrastructures via Integrated Virtual Organizations
In: EGI Community Forum 2014, Helsinki, Finland, May 2014
[C20]Grunzke, R., Hesser, J., Starek, J., Kepper, N., Gesing, S., Hardt, M., Hartmann, V., Kindermann, S., Potthoff, J., Hausmann, M., Müller-Pfefferkorn, R., and Jäkel, R. (2014)
Device-driven Metadata Management Solutions for Scientific Big Data Use Cases
Parallel, Distributed and Network-Based Processing (PDP), 2014 22nd Euromicro International Conference on , pp.317-321, 12-14 Feb. 2014, doi: 10.1109/PDP.2014.119
[C19]Kofler, K., Davis, G., and Gesing, S. (2014)
SAMPO: An Agent-based Mosquito Point Model in OpenCL
Agent-Directed Simulation Symposium (ADS 2014), Simulation Series Vol 46 #1, pp. 36-45, Curran Associates, Inc., ISBN 9781629939469

2013
[C18]Gesing, S., Atkinson, M., Klampanos, I., Galea, M., Berthold, M. R., Barbera, R., Scardaci, D., Terstyanszky, G., Kiss, T., and Kacsuk, P. (2013)
The Demand for Consistent Web-Based Workflow Editors
In: Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science, pp. 112-123, November 17-22, 2013, Denver, CO, USA, ISBN 978-1-4503-2502-8.
[C17]Herres-Pawlis, S., Hoffmann, A., Gesing, S., de la Garza, L., Krüger, J. and Grunzke, R. (2013)
User-friendly metaworkflows in quantum chemistry
Cluster Computing (CLUSTER), 2013 IEEE International Conference on , pp.1-3, 23-27 Sept. 2013, DOI: http://doi.ieeecomputersociety.org/10.1109/CLUSTER.2013.6702700
[C16]Herres-Pawlis, S., Balasko, A., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Hoffmann, A., Kacsuk, P., Krüger, J., Packschies, L., Terstyansky, G., and Weingarten, N. (2013)
User-friendly workflows in quantum chemistry
Proc. of 5th Workshop IWSG 2013, June 3-5 2013, Zurich, Switzerland, CEUR Workshop Proceedings, ISSN 1613-0073, 2013.

2012
[C15]Gesing, S., Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T. (2012)
A Science Gateway Getting Ready for Serving the International Molecular Simulation Community
Proceedings of Science, PoS(EGICF12-EMITC2)050
[C14]Grunzke, R., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Gesing, S., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Kruse, M., Müller-Pfefferkorn, R., Schäfer, P., Schuller, B., Steinke, T., and Zink, A. (2012)
A Data Driven Science Gateway for Computational Workflows
In: UNICORE Summit 2012, Dresden, Germany, May 2012, IAS Series Vol.15, p. 35-49.
[C13]Schlemmer, T.*, Grunzke, R.*, Gesing, S.*, Krüger, J., Birkenheuer, G., Müller-Pfefferkorn, R., and Kohlbacher, O. (2012)
Generic User Management for Science Gateways via Virtual Organizations
In: EGI Technical Forum 2012, Prague, Czech Republic, September 2012.
[C12]Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Gesing, S., Grunzke, R., Jäkel, R., Kohlbacher, O., Krüger, J., and Dos Santos Vieira, I. (2012)
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway
Studies in Health Technology and Informatics, 175:142-151, IOS Press.
[C11]Gesing, S. and Krüger, J. (2012)
Workshop Series IWSG-Life
Studies in Health Technology and Informatics, 175:115-118, IOS Press.
[C10]Gesing, S., Herres-Pawlis, S., Birkenheuer, G., Brinkmann, A., Grunzke, R., Kacsuk, P., Kohlbacher, O., Kozlovszky, M., Krüger, J., Müller-Pfefferkorn, R., Schäfer, P., and Steinke, T. (2012)
The MoSGrid Community - From National to International Scale
In: EGI Community Forum 2012, Munich, Germany, March 2012.
[C9]Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Gesing, S., Grunzke, R., Herres-Pawlis, S., Kohlbacher, O., Krüger, J., Lang, U., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Schuster, J., Steinke, T., Warzecha, K., and Wewior, M. (2012)
MoSGrid: Progress of Workflow driven Chemical Simulations
Proc. of Grid Workflow Workshop 2011, Cologne, Germany, March 4, 2011, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-826/paper02.pdf

2011
[C8]Gesing, S.*, Grunzke, R.*, Balasko, A., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Herres-Pawlis, S., Kacsuk, P., Kozlovszky, M., Krüger, J., Packschies, L., Schäfer, P., Schuller, B., Schuster, J., Steinke, T., Szikszay Fabri, A., Wewior, M., Müller-Pfefferkorn, R., and Kohlbacher, O. (2011).
Granular Security for a Science Gateway in Structural Bioinformatics
Proc. of 3rd Workshop IWSG-Life 2011, London, UK, June 8-10, 2011, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-819/paper8.pdf.
[C7]Gesing, S., Kacsuk, P., Kozlovszky, M., Birkenheuer, G., Blunk, D., Breuers, S., Brinkmann, A., Fels, G., Grunzke, R., Herres-Pawlis, S., Krüger, J., Packschies, L., Müller-Pfefferkorn, R., Schäfer, P., Steinke, T., Szikszay Fabri, A., Warzecha, K., Wewior, M., and Kohlbacher, O. (2011)
A Science Gateway for Molecular Simulations.
In: EGI User Forum 2011, Book of Abstracts, pp. 94--95, ISBN 978 90 816927 1 7.

2010
[C6]Gesing, S, van Hemert, J.I., Koetsier, J., Bertsch, A, and Kohlbacher, O (2010)
TOPP goes Rapid—The OpenMS Proteomics Pipeline in a Grid-enabled Web Portal
CCGrid, pp.598-599, 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, 2010. DOI: http://doi.ieeecomputersociety.org/10.1109/CCGRID.2010.39
[C5]Gesing, S., Marton, I., Birkenheuer, G., Schuller, B., Grunzke, R., Krüger, J., Breuers, S., Blunk, D., Fels, G., Packschies, L., Brinkmann, A., Kohlbacher, O., and Kozlovszky, M. (2010)
Workflow Interoperability in a Grid Portal for Molecular Simulations
In: Proceedings of the International Workshop on Science Gateways (IWSG2010), pp. 44-48, Consorzio COMETA, ISBN: 978-88-95892-03-0.
[C4]Wewior, M., Packschies, L., Blunk, D., Wickeroth, D., Warzecha, K., Herres-Pawlis, S., Gesing, S., Breuers, S., Krüger, J., Birkenheuer, G., and Lang, U.(2010)
The MoSGrid Gaussian portlet -- Technologies for Implementation of Portlets for Molecular Simulations
In: Proceedings of the International Workshop on Science Gateways (IWSG2010), pp. 39-43, Consorzio COMETA, ISBN: 978-88-95892-03-0.
[C3]Krüger, J., Birkenheuer, G., Breuers, S., Gesing, S., Wewior, M., Brinkmann, A., Blunk, D., Kohlbacher, O., Packschies, L., and Fels, G. (2010)
Workflows and Analysis Approaches for Molecular Dynamics Simulations
In: Proceedings of the International Workshop on Science Gateways (IWSG2010), pp. 61, Consorzio COMETA, ISBN: 978-88-95892-03-0.
[C2]Birkenheuer, G, Breuers, S, Brinkmann, A, Blunk, D, Fels, G, Gesing, S, Herres-Pawlis, S, Kohlbacher, O, Krüger, J, and Packschies, L (2010)
Grid-Workflows in Molecular Science
Software Engineering 2010, Grid Workflow Workshop, pp. 177-184, GI-Edition - Lecture Notes in Informatics (LNI), P-160, ISSN 1617-5468, 2010.

2009
[C1]Gesing, S, Kohlbacher, O, and van Hemert, J.I. (2009)
Portals for Life Sciences - a Brief Introduction
Proc. of 1st Workshop IWPLS'09, Edinburgh, UK, September 14-15, 2009, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-513/paper01.pdf

[accepted] [2017] [2016] [2015] [2014] [2013] [2012] [2011] [2010] [2009]

Comments are closed.